PoplarV1, Main, Exploration, bibRecord, 003200

Linking the salt transcriptome with physiological responses of a salt-resistant Populus species as a strategy to identify genes important for stress acclimation.

Identifieur interne : 003200 ( Main/Exploration ); précédent : 003199; suivant : 003201

Linking the salt transcriptome with physiological responses of a salt-resistant Populus species as a strategy to identify genes important for stress acclimation.

Auteurs : Monika Brinker [Allemagne] ; Mikael Brosché ; Basia Vinocur ; Atef Abo-Ogiala ; Payam Fayyaz ; Dennis Janz ; Eric A. Ottow ; Andreas D. Cullmann ; Joachim Saborowski ; Jaakko Kangasj Rvi ; Arie Altman ; Andrea Polle

Source :

Plant physiology [ 1532-2548 ] ; 2010.

RBID : pubmed:20959419

Descripteurs français

KwdFr :
- Adaptation physiologique (génétique), Analyse de profil d'expression de gènes (MeSH), Chlorure de sodium (métabolisme), Chromatographie gazeuse-spectrométrie de masse (MeSH), Cinétique (MeSH), Feuilles de plante (métabolisme), Gènes de plante (MeSH), Populus (génétique), Populus (physiologie), Pression osmotique (MeSH), Racines de plante (métabolisme), Stress physiologique (génétique), Techniques de knock-out de gènes (MeSH).
MESH :
- génétique : Adaptation physiologique, Populus, Stress physiologique.
- métabolisme : Chlorure de sodium, Feuilles de plante, Racines de plante.
- physiologie : Populus.
- Analyse de profil d'expression de gènes, Chromatographie gazeuse-spectrométrie de masse, Cinétique, Gènes de plante, Pression osmotique, Techniques de knock-out de gènes.

English descriptors

KwdEn :
- Adaptation, Physiological (genetics), Gas Chromatography-Mass Spectrometry (MeSH), Gene Expression Profiling (MeSH), Gene Knockout Techniques (MeSH), Genes, Plant (MeSH), Kinetics (MeSH), Osmotic Pressure (MeSH), Plant Leaves (metabolism), Plant Roots (metabolism), Populus (genetics), Populus (physiology), Sodium Chloride (metabolism), Stress, Physiological (genetics).
MESH :
- chemical , metabolism : Sodium Chloride.
- genetics : Adaptation, Physiological, Populus, Stress, Physiological.
- metabolism : Plant Leaves, Plant Roots.
- physiology : Populus.
- Gas Chromatography-Mass Spectrometry, Gene Expression Profiling, Gene Knockout Techniques, Genes, Plant, Kinetics, Osmotic Pressure.

Abstract

To investigate early salt acclimation mechanisms in a salt-tolerant poplar species (Populus euphratica), the kinetics of molecular, metabolic, and physiological changes during a 24-h salt exposure were measured. Three distinct phases of salt stress were identified by analyses of the osmotic pressure and the shoot water potential: dehydration, salt accumulation, and osmotic restoration associated with ionic stress. The duration and intensity of these phases differed between leaves and roots. Transcriptome analysis using P. euphratica-specific microarrays revealed clusters of coexpressed genes in these phases, with only 3% overlapping salt-responsive genes in leaves and roots. Acclimation of cellular metabolism to high salt concentrations involved remodeling of amino acid and protein biosynthesis and increased expression of molecular chaperones (dehydrins, osmotin). Leaves suffered initially from dehydration, which resulted in changes in transcript levels of mitochondrial and photosynthetic genes, indicating adjustment of energy metabolism. Initially, decreases in stress-related genes were found, whereas increases occurred only when leaves had restored the osmotic balance by salt accumulation. Comparative in silico analysis of the poplar stress regulon with Arabidopsis (Arabidopsis thaliana) orthologs was used as a strategy to reduce the number of candidate genes for functional analysis. Analysis of Arabidopsis knockout lines identified a lipocalin-like gene (AtTIL) and a gene encoding a protein with previously unknown functions (AtSIS) to play roles in salt tolerance. In conclusion, by dissecting the stress transcriptome of tolerant species, novel genes important for salt endurance can be identified.

DOI: 10.1104/pp.110.164152
PubMed: 20959419
PubMed Central: PMC2996017

Affiliations:

Links toward previous steps (curation, corpus...)

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to stream Main, to step Curation: 003032

Le document en format XML

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<term>Gene Knockout Techniques (MeSH)</term>
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<term>Kinetics (MeSH)</term>
<term>Osmotic Pressure (MeSH)</term>
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<term>Chromatographie gazeuse-spectrométrie de masse (MeSH)</term>
<term>Cinétique (MeSH)</term>
<term>Feuilles de plante (métabolisme)</term>
<term>Gènes de plante (MeSH)</term>
<term>Populus (génétique)</term>
<term>Populus (physiologie)</term>
<term>Pression osmotique (MeSH)</term>
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<term>Stress physiologique (génétique)</term>
<term>Techniques de knock-out de gènes (MeSH)</term>
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<front><div type="abstract" xml:lang="en">To investigate early salt acclimation mechanisms in a salt-tolerant poplar species (Populus euphratica), the kinetics of molecular, metabolic, and physiological changes during a 24-h salt exposure were measured. Three distinct phases of salt stress were identified by analyses of the osmotic pressure and the shoot water potential: dehydration, salt accumulation, and osmotic restoration associated with ionic stress. The duration and intensity of these phases differed between leaves and roots. Transcriptome analysis using P. euphratica-specific microarrays revealed clusters of coexpressed genes in these phases, with only 3% overlapping salt-responsive genes in leaves and roots. Acclimation of cellular metabolism to high salt concentrations involved remodeling of amino acid and protein biosynthesis and increased expression of molecular chaperones (dehydrins, osmotin). Leaves suffered initially from dehydration, which resulted in changes in transcript levels of mitochondrial and photosynthetic genes, indicating adjustment of energy metabolism. Initially, decreases in stress-related genes were found, whereas increases occurred only when leaves had restored the osmotic balance by salt accumulation. Comparative in silico analysis of the poplar stress regulon with Arabidopsis (Arabidopsis thaliana) orthologs was used as a strategy to reduce the number of candidate genes for functional analysis. Analysis of Arabidopsis knockout lines identified a lipocalin-like gene (AtTIL) and a gene encoding a protein with previously unknown functions (AtSIS) to play roles in salt tolerance. In conclusion, by dissecting the stress transcriptome of tolerant species, novel genes important for salt endurance can be identified.</div>
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<Abstract><AbstractText>To investigate early salt acclimation mechanisms in a salt-tolerant poplar species (Populus euphratica), the kinetics of molecular, metabolic, and physiological changes during a 24-h salt exposure were measured. Three distinct phases of salt stress were identified by analyses of the osmotic pressure and the shoot water potential: dehydration, salt accumulation, and osmotic restoration associated with ionic stress. The duration and intensity of these phases differed between leaves and roots. Transcriptome analysis using P. euphratica-specific microarrays revealed clusters of coexpressed genes in these phases, with only 3% overlapping salt-responsive genes in leaves and roots. Acclimation of cellular metabolism to high salt concentrations involved remodeling of amino acid and protein biosynthesis and increased expression of molecular chaperones (dehydrins, osmotin). Leaves suffered initially from dehydration, which resulted in changes in transcript levels of mitochondrial and photosynthetic genes, indicating adjustment of energy metabolism. Initially, decreases in stress-related genes were found, whereas increases occurred only when leaves had restored the osmotic balance by salt accumulation. Comparative in silico analysis of the poplar stress regulon with Arabidopsis (Arabidopsis thaliana) orthologs was used as a strategy to reduce the number of candidate genes for functional analysis. Analysis of Arabidopsis knockout lines identified a lipocalin-like gene (AtTIL) and a gene encoding a protein with previously unknown functions (AtSIS) to play roles in salt tolerance. In conclusion, by dissecting the stress transcriptome of tolerant species, novel genes important for salt endurance can be identified.</AbstractText>
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Linking the salt transcriptome with physiological responses of a salt-resistant Populus species as a strategy to identify genes important for stress acclimation.

Linking the salt transcriptome with physiological responses of a salt-resistant Populus species as a strategy to identify genes important for stress acclimation.

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